PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_42409.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 176aa    MW: 20531.5 Da    PI: 11.9046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_42409.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.37.8e-08153174224
                      AP2   2 gykGVrwdkkrgrWvAeIrdpse 24 
                               y+GVr+++ +g+WvAeIr p++
  Rsa1.0_42409.1_g00001.1 153 LYRGVRQRH-WGKWVAEIRKPRN 174
                              59******9.*********9854 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.692153176IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-5153173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-9153174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
PFVGETSSTS QRSLRKIRTI DRHNPYLLSS SYVTPDQPPP TTSLSVSSRV AFPFSLAPPS  60
IQNQQQFSYP SDHPGRQMQM ISFGPKRQVH PFLNAHQQHQ QQQHMMQYWR DILNLSPSGR  120
MMMMNMLRQE GNDLPLPLQL TRPLIQPFSA TKLYRGVRQR HWGKWVAEIR KPRNRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884229.15e-74hypothetical protein ARALYDRAFT_900468
SwissprotQ9SKT16e-56ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLD7L5C05e-74D7L5C0_ARALL; Putative uncharacterized protein
STRINGscaffold_304438.12e-73(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-56ERF family protein